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LOC4329729 ent-isokaur-15-ene synthase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329729, updated on 16-Jul-2024
Gene symbol
LOC4329729
Gene description
ent-isokaur-15-ene synthase-like
Locus tag
OSNPB_020571800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
KS5; KSL6; OsKS5; OsKS6; OsKSL6
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Try the new Transcripts and proteins table
See LOC4329729 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22366953..22379898, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21886211..21899237, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ent-pimara-8(14),15-diene synthase-like Neighboring gene uncharacterized LOC136355156 Neighboring gene oryzalexin E synthase-like Neighboring gene ent-cassa-12,15-diene synthase-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Characterization of a rice gene family encoding type-A diterpene cyclases. Kanno Y, et al. Biosci Biotechnol Biochem, 2006 Jul. PMID 16861806
  2. Functional characterization of the rice kaurene synthase-like gene family. Xu M, et al. Phytochemistry, 2007 Feb. PMID 17141283
  3. Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway. Margis-Pinheiro M, et al. Plant Cell Rep, 2005 Mar. PMID 15668792
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables terpene synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in diterpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ent-isokaur-15-ene synthase
Names
Ent-kaurene synthase-like 5
Ent-kaurene synthase-like 6
LOC_Os02g36264
P0689H05.34
P0689H05.36
diterpene cyclase-like protein
ent-kaurene synthase like 6
ent-kaurene synthase like-5
iso-kaurene synthase
putative ent-kaurene synthase B
NP_001388810.1
NP_001388811.1
XP_015625944.1
XP_015625945.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401881.1 → NP_001388810.1  ent-isokaur-15-ene synthase isoform 1

    Status: VALIDATED

    Source sequence(s)
    AB126936, AP014958, AY347881, CI350216, CI592926

  2. NM_001401882.1 → NP_001388811.1  ent-isokaur-15-ene synthase isoform 2

    Status: VALIDATED

    Source sequence(s)
    AB126936, AY347881, CI350216, CI592926
    UniProtKB/Swiss-Prot
    A0A0P0VKP2, A4KAG8, Q0E083, Q2PHF1, Q69DS6, Q6Z5J0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    22366953..22379898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770458.3 → XP_015625944.1  ent-isokaur-15-ene synthase isoform X2

    Conserved Domains (1) summary
    PLN02279
    Location:81 → 824
    PLN02279; ent-kaur-16-ene synthase

  2. XM_015770459.3 → XP_015625945.1  ent-isokaur-15-ene synthase isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0VKP2, A4KAG8, Q0E083, Q2PHF1, Q69DS6, Q6Z5J0
    Conserved Domains (1) summary
    PLN02279
    Location:66 → 809
    PLN02279; ent-kaur-16-ene synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4KAG8.2 GenPept UniProtKB/Swiss-Prot:A4KAG8

Gene LinkOut

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Molecular Biology Databases
Research Materials