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LOC4329675 eukaryotic translation initiation factor 2D [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329675, updated on 16-Jun-2026
Gene symbol
LOC4329675
Gene description
eukaryotic translation initiation factor 2D
Locus tag
OSNPB_020557600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4329675 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21594901..21601125, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21115926..21122160, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene auxin response factor 7-like Neighboring gene RING-H2 finger protein ATL58 Neighboring gene zinc finger CCCH domain-containing protein 16-like Neighboring gene NADPH-dependent pterin aldehyde reductase Neighboring gene two-component response regulator ORR2-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formation of translation preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
eukaryotic translation initiation factor 2D
Names
OSJNBb0038F20.9
Os02g0557600
putative Ligatin (Hepatocellular carcinoma-associated antigen 56)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416673.1 → NP_001403602.1  eukaryotic translation initiation factor 2D

    Status: VALIDATED

    Source sequence(s)
    AK064926, CI081394, CI406672, CI556833, CP132236
    UniProtKB/TrEMBL
    B8ADX6, Q6YVX8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    21594901..21601125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770048.3 → XP_015625534.1  eukaryotic translation initiation factor 2D isoform X1

    UniProtKB/TrEMBL
    B8ADX6, Q6YVX8
    Conserved Domains (3) summary
    cd11608
    Location:515 → 598
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    COG2016
    Location:6 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]
    cd21156
    Location:92 → 174
    PUA_eIF2d-like; PUA RNA-binding domain of eukaryotic translation initiation factor 2D and similar proteins
Nucleotide Protein
Heading Accession and Version

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