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LOC4329578 2-Cys peroxiredoxin BAS1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329578, updated on 9-Aug-2018

Summary

Gene symbol
LOC4329578
Gene description
2-Cys peroxiredoxin BAS1, chloroplastic-like
Locus tag
OSNPB_020537700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
bas1
Expression
Broad expression in leaves before flowering (RPKM 416.3), flowers (RPKM 222.2) and 5 other tissues See more

Genomic context

See LOC4329578 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19882057..19885744)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene chaperone protein ClpB1-like Neighboring gene transcription factor E2FB Neighboring gene protein SMAX1-LIKE 3 Neighboring gene glutathione S-transferase T3-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
2-Cys peroxiredoxin BAS1, chloroplastic
Names
LOC_Os02g33450
OSJNBa0014M17.2
Os02g0537700
P0508B05.23
Thiol-specific antioxidant protein
putative thioredoxin peroxidase

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    19882057..19885744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771919.2XP_015627405.1  2-Cys peroxiredoxin BAS1, chloroplastic

    UniProtKB/Swiss-Prot
    Q6ER94
    Conserved Domains (2) summary
    COG0450
    Location:68260
    AhpC; Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) [Defense mechanisms]
    cd03015
    Location:70243
    PRX_Typ2cys; Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. ...
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