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Gm48957 predicted gene, 48957 [ Mus musculus (house mouse) ]

Gene ID: 432939, updated on 26-Sep-2022

Summary

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Official Symbol
Gm48957provided by MGI
Official Full Name
predicted gene, 48957provided by MGI
Primary source
MGI:MGI:6118287
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG432939; 100040583
Expression
Biased expression in CNS E18 (RPKM 4.2), whole brain E14.5 (RPKM 3.2) and 5 other tissues See more
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Genomic context

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See Gm48957 in Genome Data Viewer
Location:
15 B1; 15
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (25414276..25481434)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (25414190..25481348)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930445E18 gene Neighboring gene predicted gene, 36555 Neighboring gene brain abundant, membrane attached signal protein 1 Neighboring gene predicted gene, 36642 Neighboring gene myosin X Neighboring gene PCNA-associated factor pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027376.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118639, AC161537, AK086247, AK139483

  2. NR_168931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118639, AC161537

  3. NR_168933.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118639, AC161537

  4. NR_168934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118639, AC161537

  5. NR_168936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118639, AC161537

  6. NR_168940.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118639, AC161537

  7. NR_168942.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118639, AC161537

  8. NR_168943.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118639, AC161537

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    25414276..25481434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013791.2: Suppressed sequence

    Description
    NM_001013791.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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