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LOC4329226 SNAP25 homologous protein SNAP32-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329226, updated on 1-Aug-2024
Gene symbol
LOC4329226
Gene description
SNAP25 homologous protein SNAP32-like
Locus tag
OSNPB_020437200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SNAP1
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See LOC4329226 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (14406799..14409108, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (13949442..13951879, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC136355439 Neighboring gene vacuolar protein sorting-associated protein 45 homolog Neighboring gene uncharacterized LOC9272581

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.). Bao YM, et al. Mol Biol Rep, 2008 Jun. PMID 17380428
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
SNAP25 homologous protein SNAP32-like
Names
Os02g0437200

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    14406799..14409108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307124.1 → XP_066163221.1  SNAP25 homologous protein SNAP32-like isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0VIH5, A0A8I3B3R7, B9F5G0, Q0E1I7, Q5EEP3
    UniProtKB/TrEMBL
    A2X4A5

  2. XM_066307123.1 → XP_066163220.1  SNAP25 homologous protein SNAP32-like isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0VIH5, A0A8I3B3R7, B9F5G0, Q0E1I7, Q5EEP3
    UniProtKB/TrEMBL
    A2X4A5

  3. XM_015767333.3 → XP_015622819.1  SNAP25 homologous protein SNAP32-like isoform X1

    Conserved Domains (2) summary
    cd15841
    Location:260 → 318
    SNARE_Qc; SNARE motif, subgroup Qc
    cd15861
    Location:127 → 190
    SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9

  4. XM_015767335.3 → XP_015622821.1  SNAP25 homologous protein SNAP32-like isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0VIH5, A0A8I3B3R7, B9F5G0, Q0E1I7, Q5EEP3
    UniProtKB/TrEMBL
    A2X4A5
    Conserved Domains (2) summary
    cd15841
    Location:221 → 279
    SNARE_Qc; SNARE motif, subgroup Qc
    cd15861
    Location:88 → 151
    SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9

  5. XM_015767334.3 → XP_015622820.1  SNAP25 homologous protein SNAP32-like isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0VIH5, A0A8I3B3R7, B9F5G0, Q0E1I7, Q5EEP3
    UniProtKB/TrEMBL
    A2X4A5
    Conserved Domains (2) summary
    cd15841
    Location:221 → 279
    SNARE_Qc; SNARE motif, subgroup Qc
    cd15861
    Location:88 → 151
    SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9
Nucleotide Protein
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