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LOC4329217 transcription factor bHLH121 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329217, updated on 13-Oct-2018

Summary

Gene symbol
LOC4329217
Gene description
transcription factor bHLH121
Locus tag
OSNPB_020433600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 21.0), leaves before flowering (RPKM 18.2) and 6 other tissues See more

Genomic context

See LOC4329217 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (13759191..13767249)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279914 Neighboring gene uncharacterized LOC107279913 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
transcription factor bHLH121
Names
OSJNBa0065F08.2
Os02g0433600
bHLH transcription factor
basic helix-loop-helix-like protein

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    13759191..13767249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770794.2XP_015626280.1  transcription factor bHLH121 isoform X1

    UniProtKB/TrEMBL
    Q67U21
    Conserved Domains (2) summary
    pfam00010
    Location:4090
    HLH; Helix-loop-helix DNA-binding domain
    pfam06005
    Location:83142
    DUF904; Protein of unknown function (DUF904)
  2. XM_026023444.1XP_025879229.1  transcription factor bHLH121 isoform X2

    Conserved Domains (1) summary
    pfam12325
    Location:2070
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
  3. XM_026023443.1XP_025879228.1  transcription factor bHLH121 isoform X2

    Conserved Domains (1) summary
    pfam12325
    Location:2070
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
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