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LOC4329042 small ribosomal subunit protein eS1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329042, updated on 12-Jul-2024
Gene symbol
LOC4329042
Gene description
small ribosomal subunit protein eS1-like
Locus tag
OSNPB_020287000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RSPSP94; OJ1115_D03.49; OJ1756_H07.11
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See LOC4329042 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10851860..10854767, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10822735..10825695, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937952 Neighboring gene uncharacterized LOC112937951 Neighboring gene cell number regulator 10 Neighboring gene uncharacterized LOC107279975 Neighboring gene uncharacterized LOC136355023

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
small ribosomal subunit protein eS1-like
Names
Os02g0287000
S-phase-specific ribosomal protein
putative ribosomal protein S3a, cytosolic

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    10851860..10854767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771882.3 → XP_015627368.1  small ribosomal subunit protein eS1-like

    UniProtKB/TrEMBL
    A2X3J5, O65108, Q6K8B8, Q6KA44
    Conserved Domains (1) summary
    pfam01015
    Location:20 → 221
    Ribosomal_S3Ae; Ribosomal S3Ae family
Nucleotide Protein
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