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LOC4329024 disease resistance protein RGA2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329024, updated on 1-Aug-2024
Gene symbol
LOC4329024
Gene description
disease resistance protein RGA2
Locus tag
OSNPB_020281200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4329024 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10473650..10480048)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10444478..10450977)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein Neighboring gene F-box protein At3g58530 Neighboring gene putative disease resistance protein RGA1 Neighboring gene putative disease resistance protein RGA4

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
disease resistance protein RGA2
Names
OSJNBa0063E14.6
Os02g0281200
P0669G10.23
putative NBS-LRR type disease resistance protein RPG1-B

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    10473650..10480048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767192.3 → XP_015622678.1  disease resistance protein RGA2 isoform X2

    UniProtKB/TrEMBL
    Q6ES14, Q6K3D1
    Conserved Domains (4) summary
    sd00033
    Location:626 → 649
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:810 → 835
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:225 → 448
    NB-ARC; NB-ARC domain
    pfam18052
    Location:40 → 101
    Rx_N; Rx N-terminal domain

  2. XM_015767185.2 → XP_015622671.1  disease resistance protein RGA2 isoform X1

    Conserved Domains (4) summary
    sd00033
    Location:626 → 649
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:810 → 835
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:225 → 448
    NB-ARC; NB-ARC domain
    pfam18052
    Location:41 → 101
    Rx_N; Rx N-terminal domain

  3. XM_066308058.1 → XP_066164155.1  disease resistance protein RGA2 isoform X2

    UniProtKB/TrEMBL
    Q6ES14, Q6K3D1

  4. XM_015767186.2 → XP_015622672.1  disease resistance protein RGA2 isoform X1

    Conserved Domains (4) summary
    sd00033
    Location:626 → 649
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:810 → 835
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:225 → 448
    NB-ARC; NB-ARC domain
    pfam18052
    Location:41 → 101
    Rx_N; Rx N-terminal domain

  5. XM_015767191.2 → XP_015622677.1  disease resistance protein RGA2 isoform X1

    Conserved Domains (4) summary
    sd00033
    Location:626 → 649
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:810 → 835
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:225 → 448
    NB-ARC; NB-ARC domain
    pfam18052
    Location:41 → 101
    Rx_N; Rx N-terminal domain

  6. XM_026023383.2 → XP_025879168.1  disease resistance protein RGA2 isoform X1

    Conserved Domains (4) summary
    sd00033
    Location:626 → 649
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:810 → 835
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:225 → 448
    NB-ARC; NB-ARC domain
    pfam18052
    Location:41 → 101
    Rx_N; Rx N-terminal domain

  7. XM_026023379.2 → XP_025879164.1  disease resistance protein RGA2 isoform X1

    Conserved Domains (4) summary
    sd00033
    Location:626 → 649
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:810 → 835
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:225 → 448
    NB-ARC; NB-ARC domain
    pfam18052
    Location:41 → 101
    Rx_N; Rx N-terminal domain
Nucleotide Protein
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