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LOC4328954 vacuolar protein sorting-associated protein 29 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328954, updated on 16-Jun-2026
Gene symbol
LOC4328954
Gene description
vacuolar protein sorting-associated protein 29
Locus tag
OSNPB_020265400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4328954 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9485498..9491013, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9458287..9463824, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene arabinogalactan protein 20 Neighboring gene probable WRKY transcription factor 27 Neighboring gene early light-induced protein 1, chloroplastic Neighboring gene uncharacterized LOC4328955

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
vacuolar protein sorting-associated protein 29
Names
Os02g0265400
P0006C08.21
putative vacuolar protein sorting; Vps29p

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    9485498..9491013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771841.3 → XP_015627327.1  vacuolar protein sorting-associated protein 29

    UniProtKB/TrEMBL
    A2X377, B7EJX9, Q0E275, Q6ETY0
    Conserved Domains (1) summary
    cd07394
    Location:3 → 180
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain
Nucleotide Protein
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