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LOC4328830 shaggy-related protein kinase GSK4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328830, updated on 3-Jun-2019

Summary

Gene symbol
LOC4328830
Gene description
shaggy-related protein kinase GSK4-like
Locus tag
OSNPB_020236200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1077_A12.17
Expression
Ubiquitous expression in leaves after flowering (RPKM 68.3), roots after flowering (RPKM 65.8) and 6 other tissues See more

Genomic context

See LOC4328830 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7719188..7723681, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene aspartate aminotransferase, mitochondrial Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At5g45780 Neighboring gene zinc finger MYM-type protein 1 Neighboring gene peroxidase P7

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
shaggy-related protein kinase GSK4-like
Names
Os02g0236200
putative Shaggy-related protein kinase dzeta (ASK-dzeta)
shaggy-related protein kinase eta

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    7719188..7723681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771211.2XP_015626697.1  shaggy-related protein kinase GSK4-like

    UniProtKB/TrEMBL
    Q6EUS4
    Conserved Domains (2) summary
    smart00220
    Location:74358
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14137
    Location:69361
    STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3
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