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LOC4328812 citrate synthase 3, peroxisomal [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328812, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4328812
Gene description
citrate synthase 3, peroxisomal
Locus tag
OSNPB_020232400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1705_E12.26
Expression
Ubiquitous expression in flowers (RPKM 74.9), flower buds (RPKM 73.0) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7491170..7497698)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase CCNB1IP1 homolog Neighboring gene protein RICE FLOWERING LOCUS T 1-like Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g53440 Neighboring gene xylanase inhibitor protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables citrate (Si)-synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
citrate synthase 3, peroxisomal
Names
Os02g0232400
putative Citrate synthase, glyoxysomal precursor (GCS)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    7491170..7497698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771174.1 → XP_015626660.1  citrate synthase 3, peroxisomal

    UniProtKB/TrEMBL
    A0A0P0VGV1, A1YZC9, Q6EUF8
    Conserved Domains (1) summary
    PLN02456
    Location:43 → 473
    PLN02456; citrate synthase
Nucleotide Protein
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