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LOC4328330 DNA-directed RNA polymerase V subunit 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328330, updated on 19-Feb-2025
Gene symbol
LOC4328330
Gene description
DNA-directed RNA polymerase V subunit 1
Locus tag
OSNPB_020152700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2913021..2927595, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2904557..2919143, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ribulose bisphosphate carboxylase small subunit, chloroplastic Neighboring gene VIN3-like protein 2 Neighboring gene uncharacterized protein C23H3.12c Neighboring gene protein YELLOW LEAF 1, choloroplastic-like Neighboring gene uncharacterized LOC4328332

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
DNA-directed RNA polymerase V subunit 1
Names
Os02g0152700
Os02g0152800

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    2913021..2927595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769957.3 → XP_015625443.1  DNA-directed RNA polymerase V subunit 1

    UniProtKB/TrEMBL
    B9F2S6
    Conserved Domains (4) summary
    cd02737
    Location:832 → 1240
    RNAP_IV_NRPD1_C; Largest subunit (NRPD1) of Higher plant RNA polymerase IV, C-terminal domain
    cd10506
    Location:25 → 805
    RNAP_IV_RPD1_N; Largest subunit (NRPD1) of higher plant RNA polymerase IV, N-terminal domain
    pfam11523
    Location:1793 → 1867
    DUF3223; Protein of unknown function (DUF3223)
    NF033609
    Location:1317 → 1723
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
Nucleotide Protein
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