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LOC4328254 cycloartenol synthase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328254, updated on 3-Dec-2024
Gene symbol
LOC4328254
Gene description
cycloartenol synthase-like
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4328254 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2118517..2128123, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 6 Neighboring gene uncharacterized LOC136355331 Neighboring gene squamosa promoter-binding-like protein 3 Neighboring gene aspartate--tRNA ligase 2, cytoplasmic Neighboring gene cycloartenol synthase-like Neighboring gene dolichol-phosphate mannose synthase subunit 2

Genomic Sequence:
NC_089036.1 Chromosome 2 Reference ASM3414082v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables intramolecular transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in triterpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
cycloartenol synthase-like
Names
Os02g0139500
NP_001393372.1
XP_066163077.1
XP_066163078.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406443.1 → NP_001393372.1  cycloartenol synthase-like isoform 1

    Status: VALIDATED

    Source sequence(s)
    AP014958
    UniProtKB/TrEMBL
    B9F2M7

RNA

  1. NR_176082.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK103080, CB642443

  2. NR_176083.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK103080, CB642443

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    2118517..2128123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306980.1 → XP_066163077.1  cycloartenol synthase-like isoform X1

    UniProtKB/TrEMBL
    B9F2M7

  2. XM_066306981.1 → XP_066163078.1  cycloartenol synthase-like isoform X2

    UniProtKB/TrEMBL
    B9F2M7
Nucleotide Protein
Heading Accession and Version

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