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LOC4328136 peroxisome biogenesis protein 16 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328136, updated on 3-Dec-2024
Gene symbol
LOC4328136
Gene description
peroxisome biogenesis protein 16
Locus tag
OSNPB_020123200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4328136 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1220878..1224895)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1213990..1218008)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ribosomal RNA small subunit methyltransferase, chloroplastic Neighboring gene cyclin-dependent kinase A-2-like Neighboring gene eukaryotic translation initiation factor 3 subunit C Neighboring gene uncharacterized LOC4328138

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in peroxisome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
peroxisome biogenesis protein 16
Names
Os02g0123200

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406422.1 → NP_001393351.1  peroxisome biogenesis protein 16

    Status: VALIDATED

    Source sequence(s)
    AK065876, CI611215
    UniProtKB/TrEMBL
    B8AGX8, B9F271

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    1220878..1224895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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