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LOC4328052 high-affinity nitrate transporter 2.1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328052, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4328052
Gene description
high-affinity nitrate transporter 2.1-like
Locus tag
OSNPB_020112600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NRT2.2; OsNRT2.2; OsJ_05080; OJ1399_H05.7
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (667179..669065, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271337 Neighboring gene high-affinity nitrate transporter 2.1 Neighboring gene thaumatin-like protein PWIR2 Neighboring gene probable gamma-aminobutyrate transaminase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nitrate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to nitrate IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nitrate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type vacuole membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high-affinity nitrate transporter 2.2
Names
High-affinity nitrate transporter 2.2
LOC_Os02g02190
P0501G04.36
high affinity nitrate transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401745.1 → NP_001388674.1  high-affinity nitrate transporter 2.2

    Status: VALIDATED

    Source sequence(s)
    AK109733, CI226340
    UniProtKB/Swiss-Prot
    A0A0N7KEJ9, O82138, P0DKG9, P0DKH0, Q6ZH34

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    667179..669065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768110.2 → XP_015623596.1  high-affinity nitrate transporter 2.2

    UniProtKB/Swiss-Prot
    P0DKG9, P0DKH0
    Conserved Domains (1) summary
    PLN00028
    Location:34 → 504
    PLN00028; nitrate transmembrane transporter; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DKH0.1 GenPept UniProtKB/Swiss-Prot:P0DKH0

Gene LinkOut

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