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LOC4327968 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327968, updated on 3-Dec-2024
Gene symbol
LOC4327968
Gene description
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like
Locus tag
OSNPB_010802100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CMEK; ISPE; CDPMEK; OsJ_01815
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See LOC4327968 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34577979..34583398)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33971170..33976465)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278258 Neighboring gene probable E3 ubiquitin-protein ligase RHC1A Neighboring gene uncharacterized LOC4327969 Neighboring gene EID1-like F-box protein 3 Neighboring gene probable auxin efflux carrier component 9

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic
Names
4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase
LOC_Os01g58790
P0003D09.29
putative isopentenyl monophosphate kinase
NP_001388670.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401741.1 → NP_001388670.1  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AK067589, AU056041, CI035917, CI088667, CI678758
    UniProtKB/Swiss-Prot
    A0A0P0V9H3, Q8S2G0
    UniProtKB/TrEMBL
    A2WW27

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    34577979..34583398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8S2G0.1 GenPept UniProtKB/Swiss-Prot:Q8S2G0

Gene LinkOut

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Molecular Biology Databases
Research Materials