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LOC4327960 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327960, updated on 16-Jun-2026
Gene symbol
LOC4327960
Gene description
DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic
Locus tag
OSNPB_010800900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4327960 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34526101..34531325)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33917383..33924617)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327959 Neighboring gene probable F-box protein At5g04010 Neighboring gene DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic Neighboring gene uncharacterized LOC4327962

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA 3'-5' DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic
Names
DNA-(apurinic or apyrimidinic site) lyase, chloroplastic
Os01g0800900
Os01g0801000
P0003D09.13
P0003D09.14
P0691E06.45
P0691E06.46
putative DNA-(apurinic or apyrimidinic site) lyase (ARP)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    34526101..34531325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770176.3 → XP_015625662.1  DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic

    UniProtKB/TrEMBL
    B7ERR4, B8AAW4, B9ETS1, Q0JIH7, Q5VQJ9
    Conserved Domains (3) summary
    cd09087
    Location:239 → 497
    Ape1-like_AP-endo; Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases
    PLN03124
    Location:29 → 175
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    pfam02037
    Location:89 → 119
    SAP; SAP domain
Nucleotide Protein
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