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LOC4327515 amino acid transporter AVT6C [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327515, updated on 21-Jun-2026
Gene symbol
LOC4327515
Gene description
amino acid transporter AVT6C
Locus tag
OSNPB_010825800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Try the new Transcripts and proteins table
See LOC4327515 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35945839..35952048, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35320809..35327175, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene EP1-like glycoprotein 3 Neighboring gene TOM1-like protein 6 Neighboring gene uncharacterized LOC112937451 Neighboring gene uncharacterized LOC4327516 Neighboring gene copper transport protein ATX1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
amino acid transporter AVT6C
Names
uncharacterized protein LOC4327515
Os01g0825800
P0439E11.18-1
P0439E11.18-2
amino acid transporter-like protein
putative N system amino acids transporter NAT-1
sodium-coupled neutral amino acid transporter 5

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    35945839..35952048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026022201.2 → XP_025877986.1  amino acid transporter AVT6C isoform X4

    UniProtKB/TrEMBL
    B8ABL9
    Conserved Domains (1) summary
    cl00456
    Location:31 → 401
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_015771153.3 → XP_015626639.1  amino acid transporter AVT6C isoform X3

    UniProtKB/TrEMBL
    A0A5S6R6I5, B7ESV1, B8ABL9, Q0JI42, Q5QMB0
    Conserved Domains (1) summary
    cl00456
    Location:31 → 402
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_066305041.1 → XP_066161138.1  uncharacterized protein LOC4327515 isoform X1

  4. XM_015771077.3 → XP_015626563.1  amino acid transporter AVT6C isoform X2

    UniProtKB/TrEMBL
    A0A0P0V9X3, Q5QMA9
    Conserved Domains (2) summary
    COG0814
    Location:41 → 449
    SdaC; Amino acid permease [Amino acid transport and metabolism]
    cl00456
    Location:41 → 405
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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