U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4327345 phosphoribosylaminoimidazole carboxylase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327345, updated on 12-Jul-2024
Gene symbol
LOC4327345
Gene description
phosphoribosylaminoimidazole carboxylase, chloroplastic
Locus tag
OSNPB_010199900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
B1015E06.1
Try the new Gene page
Try the new Transcripts and proteins table
See LOC4327345 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5415381..5422117)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5406050..5412766)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281454 Neighboring gene uncharacterized LOC4327344 Neighboring gene autophagy-related protein 3 Neighboring gene uncharacterized LOC9272131

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoribosylaminoimidazole carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' IMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
phosphoribosylaminoimidazole carboxylase, chloroplastic
Names
B1046G12.39
Os01g0199900
putative phosphoribosylaminoimidazole carboxylase, chloroplast

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    5415381..5422117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758176.3 → XP_015613662.1  phosphoribosylaminoimidazole carboxylase, chloroplastic

    UniProtKB/TrEMBL
    B9ETX7, Q0JPV2, Q5QN02
    Conserved Domains (3) summary
    PLN02948
    Location:50 → 625
    PLN02948; phosphoribosylaminoimidazole carboxylase
    pfam00731
    Location:462 → 606
    AIRC; AIR carboxylase
    pfam02222
    Location:180 → 349
    ATP-grasp; ATP-grasp domain

RNA

  1. XR_003241179.2 RNA Sequence

  2. XR_003241182.2 RNA Sequence

  3. XR_003241185.2 RNA Sequence

  4. XR_010741757.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials