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LOC4327150 photosystem II reaction center W protein, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327150, updated on 6-Sep-2025
Gene symbol
LOC4327150
Gene description
photosystem II reaction center W protein, chloroplastic-like
Locus tag
OSNPB_010773700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PSBW
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See LOC4327150 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33314188..33314966, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32708534..32709308, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355004 Neighboring gene uncharacterized LOC4327148 Neighboring gene uncharacterized LOC107276664 Neighboring gene alpha-mannosidase I MNS4 Neighboring gene transcription factor BHLH148-like Neighboring gene uncharacterized LOC112938323

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosystem II stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of photosystem II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
photosystem II reaction center W protein, chloroplastic
Names
LOC_Os01g56680
P0490D09.17
PSII 6.1 kDa protein
putative photosystem II reaction center W protein

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406303.1 → NP_001393232.1  photosystem II reaction center W protein, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AU183247, CI732363
    UniProtKB/Swiss-Prot
    B7E500, Q5ZBY9
    UniProtKB/TrEMBL
    A2WVK4, B9ET99

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    33314188..33314966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZBY9.1 GenPept UniProtKB/Swiss-Prot:Q5ZBY9

Gene LinkOut

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Molecular Biology Databases
Research Materials