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LOC4326831 mitochondrial thiamine diphosphate carrier 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326831, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4326831
Gene description
mitochondrial thiamine diphosphate carrier 2
Locus tag
OSNPB_010934200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0492G09.2
Expression
Ubiquitous expression in roots before flowering (RPKM 20.7), mature seeds (RPKM 10.8) and 6 other tissues See more
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Genomic context

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See LOC4326831 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40978318..40983586)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 18a Neighboring gene protein SRC2 Neighboring gene homeobox protein LUMINIDEPENDENS Neighboring gene psbP domain-containing protein 7, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thiamine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in thiamine pyrophosphate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial thiamine diphosphate carrier 2
Names
Os01g0934200
P0423A12.32
mitochondrial thiamine pyrophosphate carrier
putative mitochondrial deoxynucleotide carrier

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    40978318..40983586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766750.2 → XP_015622236.1  mitochondrial thiamine diphosphate carrier 2

    UniProtKB/TrEMBL
    A0A0P0VCK7, B8A8T3, Q5JMQ9, Q5JMY9
    Conserved Domains (2) summary
    PTZ00169
    Location:80 → 391
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:295 → 398
    Mito_carr; Mitochondrial carrier protein

RNA

  1. XR_001542671.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials