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LOC4326551 tryptophan--tRNA ligase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326551, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4326551
Gene description
tryptophan--tRNA ligase, chloroplastic/mitochondrial
Locus tag
OSNPB_010743400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 10.6), flowers (RPKM 7.7) and 6 other tissues See more
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Genomic context

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See LOC4326551 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31070176..31076301, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene probable pectinesterase 53 Neighboring gene probable glutamate carboxypeptidase LAMP1 Neighboring gene NADP-dependent malic enzyme Neighboring gene uncharacterized LOC4326165 Neighboring gene pseudo histidine-containing phosphotransfer protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tryptophan-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tryptophanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tryptophan--tRNA ligase, chloroplastic/mitochondrial
Names
Os01g0743400
P0439E07.32-1
P0439E07.32-2
putative tryptophanyl-tRNA synthetase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    31070176..31076301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758586.2 → XP_015614072.1  tryptophan--tRNA ligase, chloroplastic/mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A0P0V817, A0A0P0V819, A0A9K3Y7J6, A2WUY5, A2ZXQ1, Q0JJE6, Q5JKV1, Q5JKV2
    Conserved Domains (1) summary
    PLN02886
    Location:14 → 399
    PLN02886; aminoacyl-tRNA ligase

  2. XM_015758593.2 → XP_015614079.1  tryptophan--tRNA ligase, chloroplastic/mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A0P0V817, Q0JJE6, Q5JKV1
    Conserved Domains (2) summary
    PLN02886
    Location:14 → 325
    PLN02886; aminoacyl-tRNA ligase
    PRK00927
    Location:58 → 325
    PRK00927; tryptophanyl-tRNA synthetase; Reviewed
Nucleotide Protein
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