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LOC4326045 ABC transporter G family member 7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326045, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4326045
Gene description
ABC transporter G family member 7
Locus tag
OSNPB_010121700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0445D12.4
Expression
Ubiquitous expression in leaves before flowering (RPKM 21.5), roots after flowering (RPKM 17.9) and 6 other tissues See more
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Genomic context

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See LOC4326045 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1224040..1230501, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326043 Neighboring gene uncharacterized LOC4326044 Neighboring gene beta-glucuronosyltransferase GlcAT14A Neighboring gene uncharacterized LOC9268150

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter G family member 7
Names
Os01g0121700
putative ATP-binding-cassette protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1224040..1230501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785372.2 → XP_015640858.1  ABC transporter G family member 7

    UniProtKB/TrEMBL
    A0A0P0UXC6, B8ACZ8, B9EZ97, Q9ARU4
    Conserved Domains (1) summary
    TIGR00955
    Location:76 → 642
    3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
Nucleotide Protein
Heading Accession and Version

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