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Ccdc92b coiled-coil domain containing 92B [ Mus musculus (house mouse) ]

Gene ID: 432582, updated on 5-Mar-2024

Summary

Official Symbol
Ccdc92bprovided by MGI
Official Full Name
coiled-coil domain containing 92Bprovided by MGI
Primary source
MGI:MGI:3588240
See related
Ensembl:ENSMUSG00000069814 AllianceGenome:MGI:3588240
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E130309D14Rik
Summary
Orthologous to human CCDC92B (coiled-coil domain containing 92B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E14.5 (RPKM 9.4), liver E14 (RPKM 7.6) and 16 other tissues See more
Orthologs
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Genomic context

See Ccdc92b in Genome Data Viewer
Location:
11 B5; 11 45.76 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (74510428..74532342)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (74619594..74641516)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 1 subfamily D member 2 Neighboring gene RAP1 GTPase activating protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E7014 Neighboring gene STARR-seq mESC enhancer starr_29957 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:74369680-74369789 Neighboring gene STARR-seq mESC enhancer starr_29960 Neighboring gene STARR-seq mESC enhancer starr_29961 Neighboring gene STARR-seq mESC enhancer starr_29962 Neighboring gene predicted gene, 50590 Neighboring gene STARR-positive B cell enhancer ABC_E3971 Neighboring gene clustered mitochondria homolog Neighboring gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 Neighboring gene STARR-seq mESC enhancer starr_29966

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
coiled-coil domain-containing 92B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013784.1NP_001013806.1  coiled-coil domain-containing 92B

    Status: VALIDATED

    Source sequence(s)
    AL645971
    Consensus CDS
    CCDS25033.1
    UniProtKB/TrEMBL
    B9EKG1, Q5SUE3
    Related
    ENSMUSP00000098429.3, ENSMUST00000100866.3
    Conserved Domains (2) summary
    COG1196
    Location:41188
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam14916
    Location:4399
    CCDC92; Coiled-coil domain of unknown function

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    74510428..74532342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030246111.2XP_030101971.1  coiled-coil domain-containing 92B isoform X1

    UniProtKB/TrEMBL
    B9EKG1
    Conserved Domains (2) summary
    COG1196
    Location:5152
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam14916
    Location:763
    CCDC92; Coiled-coil domain of unknown function
  2. XM_006533659.5XP_006533722.1  coiled-coil domain-containing 92B isoform X1

    See identical proteins and their annotated locations for XP_006533722.1

    UniProtKB/TrEMBL
    B9EKG1
    Conserved Domains (2) summary
    COG1196
    Location:5152
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam14916
    Location:763
    CCDC92; Coiled-coil domain of unknown function