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LOC4325779 nodal modulator 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325779, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4325779
Gene description
nodal modulator 1
Locus tag
OSNPB_010300600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 29.9), leaves after flowering (RPKM 28.8) and 6 other tissues See more
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Genomic context

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See LOC4325779 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (11025439..11038923, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938726 Neighboring gene uncharacterized LOC9271919 Neighboring gene acyl-CoA-binding domain-containing protein 4 Neighboring gene pentatricopeptide repeat-containing protein At4g01990, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nodal modulator 1
Names
Os01g0300600
P0487H02.36
P0682B08.14
pM5 protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    11025439..11038923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765175.2 → XP_015620661.1  nodal modulator 1

    UniProtKB/TrEMBL
    A2WNV9, A2ZS73
    Conserved Domains (2) summary
    NF012181
    Location:40 → 190
    MSCRAMM_SdrD; MSCRAMM family adhesin SdrD
    pfam13620
    Location:128 → 203
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
Nucleotide Protein
Heading Accession and Version

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