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LOC4325482 protein DAMAGED DNA-BINDING 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325482, updated on 8-Apr-2017
Gene symbol
LOC4325482
Gene description
protein DAMAGED DNA-BINDING 2
Locus tag
OSNPB_010141700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Also known as
UV-DDB2; P0019D06.8
See LOC4325482 in Genome Data Viewer Map Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
101 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2250837..2255124, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like Neighboring gene protein root UVB sensitive 5 Neighboring gene mucin-5AC Neighboring gene probable zinc metalloprotease EGY2, chloroplastic

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly
  • Cul4-DDB1-DDB2 complex, organism-specific biosystem (from KEGG)
    Cul4-DDB1-DDB2 complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
  • Cul4-DDB1-DDB2 complex, conserved biosystem (from KEGG)
    Cul4-DDB1-DDB2 complex, conserved biosystemStructural complex; Genetic information processing; Ubiquitin system
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
    Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
    Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...

Homology

Preferred Names
protein DAMAGED DNA-BINDING 2
Names
Os01g0141700
UV-damaged DNA binding protein 2

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    2250837..2255124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766759.1XP_015622245.1  protein DAMAGED DNA-BINDING 2

    UniProtKB/Swiss-Prot
    Q84KJ3
    Conserved Domains (3) summary
    COG2319
    Location:189517
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:197235
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:189408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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