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LOC4325474 putative lipid phosphate phosphatase 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325474, updated on 16-Jun-2026
Gene symbol
LOC4325474
Gene description
putative lipid phosphate phosphatase 3, chloroplastic
Locus tag
OSNPB_010139600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0480E02.7
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See LOC4325474 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2104988..2108347)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2097197..2101706)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B9 Neighboring gene leucine-rich repeat extensin-like protein 2 Neighboring gene uncharacterized LOC136354996 Neighboring gene protein ASPARTIC PROTEASE IN GUARD CELL 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
putative lipid phosphate phosphatase 3, chloroplastic
Names
Os01g0139600
phosphatidic acid phosphata -like

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    2104988..2108347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777344.3 → XP_015632830.1  putative lipid phosphate phosphatase 3, chloroplastic isoform X2

    Conserved Domains (1) summary
    cd03390
    Location:3 → 192
    PAP2_containing_1_like; PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both ...

  2. XM_015777335.3 → XP_015632821.1  putative lipid phosphate phosphatase 3, chloroplastic isoform X1

    UniProtKB/TrEMBL
    B7ELQ4, B8AD58, Q0JQT7
    Conserved Domains (2) summary
    PLN02250
    Location:11 → 305
    PLN02250; lipid phosphate phosphatase
    cd03390
    Location:63 → 252
    PAP2_containing_1_like; PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both ...
Nucleotide Protein
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