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LOC4325280 aspartic proteinase NANA, chloroplast [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325280, updated on 12-Jul-2024
Gene symbol
LOC4325280
Gene description
aspartic proteinase NANA, chloroplast
Locus tag
OSNPB_010679500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4325280 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28544667..28549507)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27956535..27961542)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325276 Neighboring gene uncharacterized LOC4325277 Neighboring gene UPF0678 fatty acid-binding protein-like protein At1g79260 Neighboring gene 60S ribosomal protein L37a-1-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
aspartic proteinase NANA, chloroplast
Names
B1144G04.37
B1144G04.38
Os01g0679500
Os01g0679550
chloroplast nucleoid DNA binding protein-like

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    28544667..28549507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774375.3 → XP_015629861.1  aspartic proteinase NANA, chloroplast

    UniProtKB/TrEMBL
    A2WTS5
    Conserved Domains (2) summary
    cd05476
    Location:86 → 482
    pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants
    PTZ00165
    Location:86 → 154
    PTZ00165; aspartyl protease; Provisional
Nucleotide Protein
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