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LOC4325209 factor of DNA methylation 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325209, updated on 16-Jun-2026
Gene symbol
LOC4325209
Gene description
factor of DNA methylation 1
Locus tag
OSNPB_010147700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0434B04.7
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See LOC4325209 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2587537..2591549, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2579550..2583569, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene factor of DNA methylation 2 Neighboring gene centromere-binding protein 1 Neighboring gene uncharacterized LOC4325210 Neighboring gene triosephosphate isomerase, cytosolic-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in gene silencing by siRNA-directed DNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
factor of DNA methylation 1
Names
Os01g0147700
P0416D03.43
putative transcription factor X1

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    2587537..2591549 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766573.3 → XP_015622059.1  factor of DNA methylation 1

    UniProtKB/TrEMBL
    A2WKN0, Q0JQQ0, Q5ZDL5
    Conserved Domains (4) summary
    pfam03470
    Location:75 → 118
    zf-XS; XS zinc finger domain
    pfam03468
    Location:179 → 292
    XS; XS domain
    pfam03469
    Location:567 → 697
    XH; XH domain
    cl02488
    Location:331 → 527
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
Nucleotide Protein
Heading Accession and Version

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