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LOC4325074 sm-like protein LSM3A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325074, updated on 21-Dec-2023

Summary

Gene symbol
LOC4325074
Gene description
sm-like protein LSM3A
Locus tag
OSNPB_010866700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 29.2), flowers (RPKM 26.1) and 6 other tissues See more
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Genomic context

Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37527408..37529159, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene fructose-1,6-bisphosphatase, cytosolic Neighboring gene soluble inorganic pyrophosphatase Neighboring gene protein BOLA2 Neighboring gene tubby-like F-box protein 3 Neighboring gene tyrosine--tRNA ligase 1, cytoplasmic

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
sm-like protein LSM3A
Names
Os01g0866700
P0505D12.39
small nuclear ribonucleoprotein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    37527408..37529159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015786008.2XP_015641494.1  sm-like protein LSM3A

    UniProtKB/TrEMBL
    A0A0P0VAW1, A2WXB5, A2ZZX9, Q5N9F1
    Conserved Domains (1) summary
    cd01730
    Location:1899
    LSm3; Like-Sm protein 3