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LOC4325035 AP2-like ethylene-responsive transcription factor PLT1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325035, updated on 3-Dec-2024
Gene symbol
LOC4325035
Gene description
AP2-like ethylene-responsive transcription factor PLT1
Locus tag
OSNPB_010899800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4325035 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39774439..39778494, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39141131..39145677, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At3g49140 Neighboring gene uncharacterized LOC136354966 Neighboring gene extensin-1 Neighboring gene uncharacterized LOC4325036 Neighboring gene phospholipase A1 EG1, chloroplastic/mitochondrial

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
AP2-like ethylene-responsive transcription factor PLT1
Names
Os01g0899800

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    39774439..39778494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309074.1 → XP_066165171.1  AP2-like ethylene-responsive transcription factor PLT1

    UniProtKB/TrEMBL
    A0A0P0VBN0
Nucleotide Protein
Heading Accession and Version

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