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LOC4324953 3-phosphoinositide-dependent protein kinase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324953, updated on 13-Oct-2018

Summary

Gene symbol
LOC4324953
Gene description
3-phosphoinositide-dependent protein kinase 2
Locus tag
OSNPB_010872800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 36.5), leaves after flowering (RPKM 32.4) and 6 other tissues See more

Genomic context

See LOC4324953 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37853406..37857522, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene CRIB domain-containing protein RIC10-like Neighboring gene 5'-3' exoribonuclease 3 Neighboring gene glutathione S-transferase T3 Neighboring gene amidophosphoribosyltransferase, chloroplastic

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

General protein information

Preferred Names
3-phosphoinositide-dependent protein kinase 1; 3-phosphoinositide-dependent protein kinase 2
Names
OSJNBb0008G24.23
Os01g0872800
P0491F11.17
putative 3-phosphoinositide-dependent protein kinase-1
putative phosphoinositide dependent kinase-1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    37853406..37857522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766734.2XP_015622220.1  3-phosphoinositide-dependent protein kinase 2 isoform X1

    UniProtKB/TrEMBL
    Q8RUE8
    Conserved Domains (3) summary
    smart00220
    Location:51317
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd05581
    Location:50317
    STKc_PDK1; Catalytic domain of the Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1
    pfam14593
    Location:392497
    PH_3; PH domain
  2. XM_026022373.1XP_025878158.1  3-phosphoinositide-dependent protein kinase 1 isoform X2

    Conserved Domains (1) summary
    cd05581
    Location:50317
    STKc_PDK1; Catalytic domain of the Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1
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