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LOC4324933 photosystem II 22 kDa protein 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324933, updated on 13-Jul-2024
Gene symbol
LOC4324933
Gene description
photosystem II 22 kDa protein 1, chloroplastic
Locus tag
OSNPB_010869800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0039A07.6
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Try the new Transcripts and proteins table
See LOC4324933 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38325263..38328125)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37696783..37699583)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene uncharacterized LOC112937602 Neighboring gene serine/threonine-protein kinase SAPK4-like Neighboring gene probable ion channel POLLUX Neighboring gene uncharacterized LOC107276856

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Physiological functions of PsbS-dependent and PsbS-independent NPQ under naturally fluctuating light conditions. Ikeuchi M, et al. Plant Cell Physiol, 2014 Jul. PMID 24850835
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PsbS plays an important role in photoprotective process at the induction phase of photosynthesis as well as under field conditions.
    Title: Physiological functions of PsbS-dependent and PsbS-independent NPQ under naturally fluctuating light conditions.
Submit: New GeneRIF Correction

Homology

Preferred Names
photosystem II 22 kDa protein 1, chloroplastic
Names
Os01g0869800
P0677H08.38
photosystem II 22 kDa protein, chloroplastic
photosystem II subunit
putative photosystem II subunit PsbS

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    38325263..38328125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765683.2 → XP_015621169.1  photosystem II 22 kDa protein 1, chloroplastic

    UniProtKB/Swiss-Prot
    A2WXD9, Q943K1
    UniProtKB/TrEMBL
    A0A6B7JHG1
    Conserved Domains (1) summary
    PLN00084
    Location:195 → 252
    PLN00084; photosystem II subunit S (PsbS); Provisional
Nucleotide Protein
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