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LOC4324905 uncharacterized LOC4324905 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324905, updated on 3-Dec-2024
Gene symbol
LOC4324905
Gene description
uncharacterized LOC4324905
Locus tag
OSNPB_010889200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39289703..39293918, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38659386..38663696, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324903 Neighboring gene uncharacterized LOC4324904 Neighboring gene LOB domain-containing protein 6-like Neighboring gene rhodanese-like domain-containing protein 4A, chloroplastic

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein LOC4324905
Names
Os01g0889200

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    39289703..39293918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306590.1 → XP_066162687.1  uncharacterized protein LOC4324905 isoform X2

    UniProtKB/TrEMBL
    B8A7D1

  2. XM_015765461.3 → XP_015620947.1  uncharacterized protein LOC4324905 isoform X1

    UniProtKB/TrEMBL
    B8A7D1
    Conserved Domains (1) summary
    pfam05132
    Location:171 → 276
    RNA_pol_Rpc4; RNA polymerase III RPC4

  3. XM_066306589.1 → XP_066162686.1  uncharacterized protein LOC4324905 isoform X2

    UniProtKB/TrEMBL
    B8A7D1

  4. XM_015765460.3 → XP_015620946.1  uncharacterized protein LOC4324905 isoform X1

    UniProtKB/TrEMBL
    B8A7D1
    Conserved Domains (1) summary
    pfam05132
    Location:171 → 276
    RNA_pol_Rpc4; RNA polymerase III RPC4

  5. XM_066306584.1 → XP_066162681.1  uncharacterized protein LOC4324905 isoform X2

    UniProtKB/TrEMBL
    B8A7D1

  6. XM_026022388.2 → XP_025878173.1  uncharacterized protein LOC4324905 isoform X1

    UniProtKB/TrEMBL
    B8A7D1
    Conserved Domains (1) summary
    pfam05132
    Location:171 → 276
    RNA_pol_Rpc4; RNA polymerase III RPC4

  7. XM_015765462.3 → XP_015620948.1  uncharacterized protein LOC4324905 isoform X2

    UniProtKB/TrEMBL
    B8A7D1
    Conserved Domains (1) summary
    pfam05132
    Location:170 → 275
    RNA_pol_Rpc4; RNA polymerase III RPC4

  8. XM_015765456.3 → XP_015620942.1  uncharacterized protein LOC4324905 isoform X1

    UniProtKB/TrEMBL
    B8A7D1
    Conserved Domains (1) summary
    pfam05132
    Location:171 → 276
    RNA_pol_Rpc4; RNA polymerase III RPC4
Nucleotide Protein
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