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LOC4324760 protein BUD31 homolog 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324760, updated on 3-Dec-2024
Gene symbol
LOC4324760
Gene description
protein BUD31 homolog 1-like
Locus tag
OSNPB_010857700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_004032; OsJ_015680
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See LOC4324760 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37696365..37698861, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37069411..37071918, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene nucleobase-ascorbate transporter 12 Neighboring gene uncharacterized LOC4324759 Neighboring gene WD repeat-containing protein ATCSA-1 Neighboring gene uncharacterized LOC4324762

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein BUD31 homolog 1
Names
LOC_Os01g63890
LOC_Os04g55290
OSJNBa0070O11.6
P0683F02.14
Protein G10 homolog 1
putative G10 protein

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001405434.1 → NP_001392363.1  protein BUD31 homolog 1

    Status: VALIDATED

    Source sequence(s)
    AK061754, CI540868
    UniProtKB/Swiss-Prot
    B7ECV3, Q0J9K4, Q7XQE3, Q94DE2
    UniProtKB/TrEMBL
    A2WX57, B8AV95

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    37696365..37698861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94DE2.1 GenPept UniProtKB/Swiss-Prot:Q94DE2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials