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LOC4324704 inorganic pyrophosphatase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324704, updated on 12-Jul-2024
Gene symbol
LOC4324704
Gene description
inorganic pyrophosphatase 1
Locus tag
OSNPB_010720400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0690B02.6
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See LOC4324704 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30622314..30623501, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30025354..30026483, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276756 Neighboring gene uncharacterized LOC107276869 Neighboring gene chlorophyll a-b binding protein 2, chloroplastic-like Neighboring gene probable starch synthase 4, chloroplastic/amyloplastic

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A phosphate starvation-induced acid phosphatase from Oryza sativa: phosphate regulation and transgenic expression. Hur YJ, et al. Biotechnol Lett, 2007 May. PMID 17415667
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
inorganic pyrophosphatase 1
Names
Os01g0720400
acid phosphatase
phosphatase-like

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    30622314..30623501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792773.3 → XP_015648259.1  inorganic pyrophosphatase 1

    UniProtKB/TrEMBL
    A0A0N7KDN0, Q06C47, Q8W0E7
    Conserved Domains (1) summary
    pfam06888
    Location:4 → 232
    Put_Phosphatase; Putative Phosphatase
Nucleotide Protein
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