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LOC4324611 copper transporter 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324611, updated on 3-Dec-2024
Gene symbol
LOC4324611
Gene description
copper transporter 3-like
Locus tag
OSNPB_010770800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
COPT2; COPT3; OsCOPT3
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See LOC4324611 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33131905..33132538)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32526232..32527137)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene ABC transporter I family member 10 Neighboring gene copper transporter 1-like Neighboring gene protein LURP-one-related 5 Neighboring gene uncharacterized protein At2g39795, mitochondrial

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice. Yuan M, et al. BMC Plant Biol, 2011 Apr 21. PMID 21510855, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in copper ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
copper transporter 3
Names
LOC_Os01g56430
P0665A11.23
putative copper transporter protein

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428140.1 → NP_001415069.1  copper transporter 3

    Status: VALIDATED

    Source sequence(s)
    AK109200
    UniProtKB/Swiss-Prot
    Q0JIY4, Q5ZD08
    UniProtKB/TrEMBL
    A2WVI2, F5BCR9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    33131905..33132538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZD08.1 GenPept UniProtKB/Swiss-Prot:Q5ZD08

Gene LinkOut

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Research Materials