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LOC4324505 aspartate--tRNA ligase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324505, updated on 4-Feb-2018
Gene symbol
LOC4324505
Gene description
aspartate--tRNA ligase, chloroplastic/mitochondrial
Locus tag
OSNPB_010153400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 31.7), roots after flowering (RPKM 18.3) and 6 other tissues See more
See LOC4324505 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
101 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2873604..2882675)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At5g59900 Neighboring gene histone H2B.5 Neighboring gene uncharacterized LOC4324506 Neighboring gene uncharacterized LOC107276705

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Gene Ontology Provided by Gramene

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
aminoacyl-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 
aspartate-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
aspartyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 
tRNA aminoacylation for protein translation IEA
Inferred from Electronic Annotation
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
mitochondrion IEA
Inferred from Electronic Annotation
more info
 
mitochondrion RCA
inferred from Reviewed Computational Analysis
more info
 
Preferred Names
aspartate--tRNA ligase, chloroplastic/mitochondrial
Names
Os01g0153400
P0030H07.25
putative aspartyl-tRNA synthetase

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    2873604..2882675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766987.1XP_015622473.1  aspartate--tRNA ligase, chloroplastic/mitochondrial

    UniProtKB/TrEMBL
    B9ESX6
    Conserved Domains (4) summary
    PLN02903
    Location:83675
    PLN02903; aminoacyl-tRNA ligase
    cd00777
    Location:231650
    AspRS_core; Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the ...
    cd04317
    Location:88227
    EcAspRS_like_N; EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) ...
    pfam02938
    Location:402501
    GAD; GAD domain
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