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LOC4324491 2-hydroxyacyl-CoA lyase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324491, updated on 3-Dec-2024
Gene symbol
LOC4324491
Gene description
2-hydroxyacyl-CoA lyase-like
Locus tag
OSNPB_010505400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
2-HPCL
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See LOC4324491 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (18126484..18130664)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17560749..17564941)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280205 Neighboring gene small nucleolar RNA R71 Neighboring gene pentatricopeptide repeat-containing protein At1g71060, mitochondrial Neighboring gene probable calcium-binding protein CML11

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid alpha-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
2-hydroxyacyl-CoA lyase
Names
2-hydroxyphytanoyl-CoA lyase
LOC_Os01g32080
Oxalyl-CoA decarboxylase
NP_001415044.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428115.1 → NP_001415044.1  2-hydroxyacyl-CoA lyase

    Status: VALIDATED

    Source sequence(s)
    AK065111, CB657003, CB657004, CI563961
    UniProtKB/Swiss-Prot
    Q0JMH0
    UniProtKB/TrEMBL
    B8A8N0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    18126484..18130664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JMH0.3 GenPept UniProtKB/Swiss-Prot:Q0JMH0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials