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LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324479, updated on 12-Jul-2024
Gene symbol
LOC4324479
Gene description
oxygen-evolving enhancer protein 1, chloroplastic
Locus tag
OSNPB_010501800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4324479 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (17909405..17911012)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17349316..17350787)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 9 Neighboring gene sec-independent protein translocase protein TATC, chloroplastic-like Neighboring gene uncharacterized LOC107280859 Neighboring gene palmitoyl-acyl carrier protein thioesterase, chloroplastic

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxygen evolving activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photosystem II assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosystem II stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of photosystem II oxygen evolving complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
oxygen-evolving enhancer protein 1, chloroplastic
Names
B1080D07.27
Os01g0501800
putative 33kDa oxygen evolving protein of photosystem II

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    17909405..17911012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763107.3 → XP_015618593.1  oxygen-evolving enhancer protein 1, chloroplastic

    UniProtKB/TrEMBL
    A0A0N7KD11, B8A8L8, Q0JMI0, Q943W1
    Conserved Domains (1) summary
    PLN00037
    Location:21 → 333
    PLN00037; photosystem II oxygen-evolving enhancer protein 1; Provisional
Nucleotide Protein
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