U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4324377 vacuolar lysine transporter YPQ1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324377, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4324377
Gene description
vacuolar lysine transporter YPQ1
Locus tag
OSNPB_010266800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0011D01.8
Expression
Broad expression in flowers (RPKM 21.1), flower buds (RPKM 12.2) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4324377 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9146637..9153328, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9133739..9140477, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized isomerase BH0283 Neighboring gene peroxiredoxin-2F, mitochondrial-like Neighboring gene N6-adenosine-methyltransferase non-catalytic subunit MTB Neighboring gene 26S proteasome non-ATPase regulatory subunit 14 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC4324377; vacuolar lysine transporter YPQ1
Names
Os01g0266800

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    9146637..9153328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766243.3 → XP_015621729.1  vacuolar lysine transporter YPQ1 isoform X1

    UniProtKB/TrEMBL
    A0A0P0V140, B9EV43, Q5NBM2
    Conserved Domains (1) summary
    pfam04193
    Location:42 → 93
    PQ-loop; PQ loop repeat

  2. XM_026024575.2 → XP_025880360.1  uncharacterized protein LOC4324377 isoform X2

    Conserved Domains (1) summary
    pfam04193
    Location:256 → 309
    PQ-loop; PQ loop repeat

  3. XM_066311494.1 → XP_066167591.1  vacuolar lysine transporter YPQ1 isoform X1

    UniProtKB/TrEMBL
    A0A0P0V140, Q5NBM2
Nucleotide Protein
Heading Accession and Version