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Gm5420 predicted gene 5420 [ Mus musculus (house mouse) ]

Gene ID: 432436, updated on 8-Feb-2024

Summary

Official Symbol
Gm5420provided by MGI
Official Full Name
predicted gene 5420provided by MGI
Primary source
MGI:MGI:3645721
See related
Ensembl:ENSMUSG00000056716 AllianceGenome:MGI:3645721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG432436
Summary
Is expressed in heart ventricle. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Gm5420 in Genome Data Viewer
Location:
10 A3; 10 9.81 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (21566744..21569877)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (21690845..21693978)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700020N01 gene Neighboring gene VISTA enhancer mm1426 Neighboring gene STARR-seq mESC enhancer starr_25992 Neighboring gene predicted gene, 53618 Neighboring gene STARR-seq mESC enhancer starr_25993 Neighboring gene STARR-seq mESC enhancer starr_25994 Neighboring gene STARR-seq mESC enhancer starr_25995 Neighboring gene predicted gene, 53619 Neighboring gene STARR-seq mESC enhancer starr_25996 Neighboring gene STARR-seq mESC enhancer starr_26000 Neighboring gene pluripotency associated transcript 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045843.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC156947, AK090213
    Related
    ENSMUST00000071008.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    21566744..21569877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004162.1: Suppressed sequence

    Description
    NM_001004162.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.