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LOC4324332 uncharacterized LOC4324332 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324332, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4324332
Gene description
uncharacterized LOC4324332
Locus tag
OSNPB_010916300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 13.0), roots after flowering (RPKM 10.9) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40573456..40579540, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39938802..39944890, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 1.0 Neighboring gene AP-4 complex subunit epsilon Neighboring gene selenium-binding protein 1 Neighboring gene glycine-rich RNA-binding protein 4, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoprotein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4324332
Names
Os01g0916300
P0004D12.32-1
P0004D12.32-2
P0413C03.6-1
P0413C03.6-2
putative poly-glutamine tract-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    40573456..40579540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771908.3 → XP_015627394.1  uncharacterized protein LOC4324332

    UniProtKB/TrEMBL
    A0A0P0VC39, A0A979HL70, B9EVV2, Q5JLB8, Q5N817
    Conserved Domains (1) summary
    pfam00397
    Location:251 → 281
    WW; WW domain
Nucleotide Protein
Heading Accession and Version

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