U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4324317 snRNA-activating protein complex subunit [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324317, updated on 16-Jun-2026
Gene symbol
LOC4324317
Gene description
snRNA-activating protein complex subunit
Locus tag
OSNPB_010912600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsSRD2
Try the new Gene page
Try the new Transcripts and proteins table
See LOC4324317 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40407552..40411404)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39773040..39776889)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein arginine methyltransferase NDUFAF7 homolog, mitochondrial Neighboring gene uncharacterized LOC136356473 Neighboring gene uncharacterized LOC112937614 Neighboring gene uncharacterized LOC4324318 Neighboring gene uncharacterized LOC107278441

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Cell dedifferentiation and organogenesis in vitro require more snRNA than does seedling development in Arabidopsis thaliana. Ohtani M, et al. J Plant Res, 2015 May. PMID 25740809
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase III type 3 promoter sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables bent DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables core promoter sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in snRNA transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of snRNA-activating protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
snRNA-activating protein complex subunit
Names
Os01g0912600
P0470A12.29
small nuclear RNA activating complex, polypeptide 3, 50kDa-like
snRNA transcription factor

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    40407552..40411404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772712.3 → XP_015628198.1  snRNA-activating protein complex subunit isoform X1

    UniProtKB/TrEMBL
    A0A0D6CAE4, A2WY80
    Conserved Domains (1) summary
    pfam12251
    Location:374 → 589
    zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal

  2. XM_015772720.3 → XP_015628206.1  snRNA-activating protein complex subunit isoform X2

    UniProtKB/TrEMBL
    A2WY80
    Conserved Domains (1) summary
    pfam12251
    Location:339 → 554
    zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials