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LOC4324247 AP-1 complex subunit mu-2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324247, updated on 9-Aug-2018

Summary

Gene symbol
LOC4324247
Gene description
AP-1 complex subunit mu-2
Locus tag
OSNPB_010703600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 69.9), leaves after flowering (RPKM 65.5) and 6 other tissues See more

Genomic context

See LOC4324247 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29166417..29170367)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase At4g11680 Neighboring gene farnesyl pyrophosphate synthase Neighboring gene probable pectinesterase/pectinesterase inhibitor 61 Neighboring gene high-affinity nitrate transporter 2.3-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

General protein information

Preferred Names
AP-1 complex subunit mu-2
Names
Os01g0703600
P0421H07.27-1
P0684B02.2-1
clathrin-associated protein unc-101-like

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    29166417..29170367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766630.2XP_015622116.1  AP-1 complex subunit mu-2

    UniProtKB/TrEMBL
    Q0JK13
    Conserved Domains (1) summary
    cd09250
    Location:157427
    AP-1_Mu1_Cterm; C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1
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