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LOC4324066 pyruvate decarboxylase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324066, updated on 16-Jun-2026
Gene symbol
LOC4324066
Gene description
pyruvate decarboxylase 2
Locus tag
OSNPB_010160100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4324066 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3144393..3148285, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3136161..3140222, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene em-like protein Neighboring gene putative transcription factor bHLH107 Neighboring gene receptor-like protein 6 Neighboring gene retrovirus-related Pol polyprotein from transposon TNT 1-94 Neighboring gene receptor-like protein 7

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyruvate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pyruvate decarboxylase 2
Names
Os01g0160100
P0041E11.26
putative pyruvate decarboxylase

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    3144393..3148285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759775.3 → XP_015615261.1  pyruvate decarboxylase 2

    UniProtKB/TrEMBL
    A2WKY8, A2ZPI7, Q9LGL5
    Conserved Domains (4) summary
    cd07038
    Location:32 → 200
    TPP_PYR_PDC_IPDC_like; Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins
    PLN02573
    Location:27 → 597
    PLN02573; pyruvate decarboxylase
    cd02005
    Location:398 → 580
    TPP_PDC_IPDC; Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of ...
    pfam00205
    Location:233 → 366
    TPP_enzyme_M; Thiamine pyrophosphate enzyme, central domain
Nucleotide Protein
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