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pabpc1.L poly(A) binding protein, cytoplasmic 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432140, updated on 11-Apr-2024

Summary

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Official Symbol
pabpc1.L
Official Full Name
poly(A) binding protein, cytoplasmic 1 L homeolog
Primary source
Xenbase:XB-GENE-6255999
Locus tag
XELAEV_18032252mg
See related
EnsemblRapid:ENSXLAG00005033649
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pab1; pabp; pabp1; pabpc1; pabpc2; pabpc1-a; pabpc1-b; pabpc1.S
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Genomic context

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Location:
chromosome: 6L
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (141301152..141320882)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (132138859..132158628)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene cyclin E2 L homeolog Neighboring gene tumor protein p53 inducible nuclear protein 1 L homeolog Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta L homeolog Neighboring gene uncharacterized LOC121394897

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC79060, MGC130736

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables eukaryotic initiation factor 4G binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
  
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
  
enables poly(A) binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA stabilization ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within negative regulation of nuclear-transcribed mRNA poly(A) tail shortening ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of nuclear-transcribed mRNA poly(A) tail shortening ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within regulation of translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
polyadenylate-binding protein 1-B
Names
PABP-1-B
PABP-B
cytoplasmic poly(A)-binding protein 1-B
poly(A) binding protein, cytoplasmic 1 S homeolog
poly(A)-binding protein 1-B
xPABP1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091600.1 → NP_001085069.1  polyadenylate-binding protein 1-B

    See identical proteins and their annotated locations for NP_001085069.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108462
    UniProtKB/Swiss-Prot
    Q6IP09
    UniProtKB/TrEMBL
    A0A1L8FZR3, A0A974HGF3
    Related
    ENSXLAP00005100455.1, ENSXLAT00005102413.1
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 613
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    141301152..141320882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565402.1 → XP_041421336.1  polyadenylate-binding protein 1-B isoform X1

    UniProtKB/Swiss-Prot
    Q6IP09
    UniProtKB/TrEMBL
    A0A1L8FZR3, A0A974HGF3
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 613
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IP09.1 GenPept UniProtKB/Swiss-Prot:Q6IP09

Gene LinkOut

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