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wdtc1.L WD and tetratricopeptide repeats 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432008, updated on 4-Jan-2025

Summary

Official Symbol
wdtc1.L
Official Full Name
WD and tetratricopeptide repeats 1 L homeolog
Primary source
Xenbase:XB-GENE-977182
Locus tag
XELAEV_18012098mg
See related
EnsemblRapid:ENSXLAG00005035560 AllianceGenome:Xenbase:XB-GENE-977182
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
wdtc1
Summary
Predicted to be located in nucleus. Orthologous to human WDTC1 (WD and tetratricopeptide repeats 1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

See wdtc1.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (60787554..60808832)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (58263684..58284948)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene AT-hook DNA binding motif containing 1 L homeolog Neighboring gene WAS protein family member 2 L homeolog Neighboring gene transmembrane protein 222 L homeolog Neighboring gene synaptotagmin like 1 L homeolog

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
WD and tetratricopeptide repeats 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091481.1NP_001084950.1  WD and tetratricopeptide repeats 1 L homeolog

    See identical proteins and their annotated locations for NP_001084950.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070541
    UniProtKB/TrEMBL
    Q6NS11
    Related
    ENSXLAP00005106357.1, ENSXLAT00005108453.1
    Conserved Domains (7) summary
    COG2319
    Location:28296
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:357381
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:387421
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:357421
    TPR_11; TPR repeat
    pfam13432
    Location:393458
    TPR_16; Tetratricopeptide repeat
    sd00039
    Location:5187
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:34163
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    60787554..60808832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018244991.2XP_018100480.1  WD and tetratricopeptide repeats 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UBW6
    Related
    ENSXLAP00005106335.1, ENSXLAT00005108427.1
  2. XM_018244989.2XP_018100478.1  WD and tetratricopeptide repeats 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HEA1, A0A974HXU2
  3. XM_018244990.2XP_018100479.1  WD and tetratricopeptide repeats 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HEA1, A0A974HXU2