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GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 [ Gallus gallus (chicken) ]

Gene ID: 429501, updated on 17-Aug-2024

Summary

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Symbol
GALNT6provided by CGNC
Full Name
polypeptide N-acetylgalactosaminyltransferase 6provided by CGNC
Primary source
CGNC:5032
See related
Ensembl:ENSGALG00010023805
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GALNT6 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 34 NC_052565.1 (2234375..2256060)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 34 NC_052606.1 (2082838..2103602)

Chromosome 34 - NC_052565.1Genomic Context describing neighboring genes Neighboring gene glucagon-like Neighboring gene solute carrier family 4 member 8 Neighboring gene uncharacterized LOC121108096 Neighboring gene TRAF family member-associated NF-kappa-B activator-like Neighboring gene chymotrypsin like elastase family member 1 Neighboring gene bridging integrator 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
NP_001026749.2
XP_015155855.2
XP_046760916.1
XP_046790211.1
XP_046790212.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031578.2 → NP_001026749.2  polypeptide N-acetylgalactosaminyltransferase 6

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000492
    UniProtKB/TrEMBL
    H9KZF5, Q5F4C7
    Related
    ENSGALP00010035215.1, ENSGALT00010058037.1
    Conserved Domains (2) summary
    cd02510
    Location:179 → 484
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:500 → 621
    RICIN; Ricin-type beta-trefoil

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052565.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2234375..2256060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046904960.1 → XP_046760916.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    H9KZF5, Q5F4C7

  2. XM_015300369.4 → XP_015155855.2  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    H9KZF5, Q5F4C7
    Related
    ENSGALP00010035209.1, ENSGALT00010058031.1
    Conserved Domains (2) summary
    cd02510
    Location:179 → 484
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:500 → 621
    RICIN; Ricin-type beta-trefoil

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052606.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2082838..2103602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046934256.1 → XP_046790212.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    H9KZF5, Q5F4C7

  2. XM_046934255.1 → XP_046790211.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    H9KZF5, Q5F4C7
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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