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MHCY4 major histocompatibility complex Y, class I heavy chain 4 [ Gallus gallus (chicken) ]

Gene ID: 427737, updated on 19-Jul-2022

Summary

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Official Symbol
MHCY4provided by CGNC
Official Full Name
major histocompatibility complex Y, class I heavy chain 4provided by CGNC
Primary source
CGNC:53180
See related
Ensembl:ENSGALG00010002436
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
YF6; YFVI; RJF.Contig1.LOC17.YF4
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Genomic context

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See MHCY4 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 16 NC_052547.1 (1467566..1778747, complement)

Chromosome 16 - NC_052547.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 2 member I-like Neighboring gene major histocompatibility complex Y, class I heavy chain 15 Neighboring gene C-type lectin domain family 2 member B-like Neighboring gene C-type lectin domain family 2 member B-like Neighboring gene C-type lectin domain family 2 member I-like Neighboring gene C-type lectin domain family 2 member B-like Neighboring gene C-type lectin domain family 2 member I-like Neighboring gene class I histocompatibility antigen, F10 alpha chain-like Neighboring gene leukocyte receptor cluster member 9 like 1, MHCY region pseudogene Neighboring gene major histocompatibility complex Y, class I heavy chain 7 Neighboring gene class I histocompatibility antigen, F10 alpha chain-like Neighboring gene class I histocompatibility antigen, F10 alpha chain-like Neighboring gene class I histocompatibility antigen, F10 alpha chain-like Neighboring gene C-type lectin domain family 2 member B-like Neighboring gene uncharacterized LOC121106939 Neighboring gene major histocompatibility complex Y, class I heavy chain like Neighboring gene major histocompatibility complex Y, class II beta 1 Neighboring gene microRNA 6566 Neighboring gene MHCY region zinc finger protein 1 Neighboring gene c-type lectin like 32, MHCY region pseudogene Neighboring gene c-type lectin like 33, MHCY region pseudogene Neighboring gene major histocompatibility complex Y, class II beta 7 Neighboring gene MHCY region zinc finger protein 4 Neighboring gene RNA, 5.8S ribosomal 19 Neighboring gene RNA, 28S ribosomal 19 Neighboring gene OZF like, MHCY region Neighboring gene zinc finger protein OZF-like Neighboring gene RNA, 18S ribosomal 19 Neighboring gene c-type lectin like 1, MHCY region pseudogene Neighboring gene major histocompatibility complex Y, class II beta 2 Neighboring gene uncharacterized LOC121106437 Neighboring gene MHCY region zinc finger protein 2 Neighboring gene class I histocompatibility antigen, F10 alpha chain-like Neighboring gene c-type lectin like 3, MHCY region pseudogene Neighboring gene c-type lectin like 31, MHCY region pseudogene Neighboring gene major histocompatibility complex Y, class II beta 6 pseudogene Neighboring gene MHCY region zinc finger protein 3 Neighboring gene leukocyte receptor cluster member 9-like Neighboring gene c-type lectin like 25, MHCY region pseudogene Neighboring gene major histocompatibility complex-Y, class I heavy chain-like Neighboring gene C-type lectin domain family 2 member B-like Neighboring gene class I histocompatibility antigen, F10 alpha chain-like Neighboring gene major histocompatibility complex Y, class II beta 3 pseudogene Neighboring gene class I histocompatibility antigen, F10 alpha chain-like Neighboring gene uncharacterized LOC121106955 Neighboring gene class I histocompatibility antigen, F10 alpha chain-like Neighboring gene C-type lectin domain family 2 member I-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052547.1 Chromosome 16 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Role of nonclassical class I genes of the chicken major histocompatibility complex Rfp-Y locus in transplantation immunity. Thoraval P, et al. Immunogenetics, 2003 Dec. PMID 14597999
  2. At least one class I gene in restriction fragment pattern-Y (Rfp-Y), the second MHC gene cluster in the chicken, is transcribed, polymorphic, and shows divergent specialization in antigen binding region. Afanassieff M, et al. J Immunol, 2001 Mar 1. PMID 11207288

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
major histocompatibility complex Y, class I heavy chain 4
Names
MHC Rfp-Y class I alpha
MHCY4 major histocompatibility complex-Y, class I heavy chain, 4
Major histocompatibility complex RfpY class I alpha chain YF6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395204.2 → NP_001382133.2  major histocompatibility complex Y, class I heavy chain 4

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000280
    Conserved Domains (1) summary
    smart00407
    Location:223 → 292
    IGc1; Immunoglobulin C-Type

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052547.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1467566..1778747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040648739.2 → XP_040504673.1  major histocompatibility complex Y, class I heavy chain 4 isoform X2

    Conserved Domains (1) summary
    smart00407
    Location:308 → 377
    IGc1; Immunoglobulin C-Type

  2. XM_040648741.2 → XP_040504675.1  major histocompatibility complex Y, class I heavy chain 4 isoform X3

    Conserved Domains (1) summary
    smart00407
    Location:308 → 377
    IGc1; Immunoglobulin C-Type

  3. XM_040648740.2 → XP_040504674.1  major histocompatibility complex Y, class I heavy chain 4 isoform X3

    Conserved Domains (1) summary
    smart00407
    Location:308 → 377
    IGc1; Immunoglobulin C-Type

  4. XM_046901502.1 → XP_046757458.1  major histocompatibility complex Y, class I heavy chain 4 isoform X7

  5. XM_040648747.2 → XP_040504681.1  major histocompatibility complex Y, class I heavy chain 4 isoform X7

    Conserved Domains (1) summary
    smart00407
    Location:216 → 285
    IGc1; Immunoglobulin C-Type

  6. XM_040648746.2 → XP_040504680.1  major histocompatibility complex Y, class I heavy chain 4 isoform X6

    Conserved Domains (1) summary
    smart00407
    Location:216 → 285
    IGc1; Immunoglobulin C-Type

  7. XM_046901504.1 → XP_046757460.1  major histocompatibility complex Y, class I heavy chain 4 isoform X8

  8. XM_046901503.1 → XP_046757459.1  major histocompatibility complex Y, class I heavy chain 4 isoform X8

  9. XM_040648738.2 → XP_040504672.1  major histocompatibility complex Y, class I heavy chain 4 isoform X1

    Related
    ENSGALP00010003454.1, ENSGALT00010005615.1
    Conserved Domains (1) summary
    smart00407
    Location:308 → 377
    IGc1; Immunoglobulin C-Type

  10. XM_040648745.2 → XP_040504679.1  major histocompatibility complex Y, class I heavy chain 4 isoform X5

    Conserved Domains (1) summary
    smart00407
    Location:216 → 285
    IGc1; Immunoglobulin C-Type

  11. XM_040648743.2 → XP_040504677.1  major histocompatibility complex Y, class I heavy chain 4 isoform X4

    Related
    ENSGALP00010003450.1, ENSGALT00010005611.1
    Conserved Domains (1) summary
    smart00407
    Location:216 → 285
    IGc1; Immunoglobulin C-Type
Nucleotide Protein Strain
Heading Accession and Version

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